Avogadro 2 don't show chemicals
Avogadro 2 don't show chemicals
The Avogadrolibs in the AUR is having issue with VTK and therefore cannot be compiled on my machine. So I tried using the Windows version with Wine and it successfully installed. But when I open the program it won't display chemicals on the blackboard while everything else works fine.
Re: Avogadro 2 don't show chemicals
Forgot to add, this is where I get the .exe: https://www.openchemistry.org/downloads/
Re: Avogadro 2 don't show chemicals
Does the program work if you use the LIBGL_ALWAYS_SOFTWARE=1 variable?
Version 1 suffers with this problem: viewtopic.php?f=8&t=35585
If not, can you post a terminal output?
Version 1 suffers with this problem: viewtopic.php?f=8&t=35585
Code: Select all
LIBGL_ALWAYS_SOFTWARE=1 wine avogadro2.exe
Re: Avogadro 2 don't show chemicals
Avogadro2 crashed when I execute
Here is the terminal output
Code: Select all
LIBGL_ALWAYS_SOFTWARE=1 wine ~/path/to/avogadro2.exe
Code: Select all
MESA-INTEL: warning: Ivy Bridge Vulkan support is incomplete
Locale: "en_US"
0108:fixme:nls:get_dummy_preferred_ui_language (0x8 000000000011F580 000000000011F4D0 000000000011F588) returning a dummy value (current locale)
0108:fixme:nls:get_dummy_preferred_ui_language (0x8 000000000011F580 000000000011F4D0 000000000011F588) returning a dummy value (current locale)
0108:fixme:nls:get_dummy_preferred_ui_language (0x8 000000000011F580 000000000011F4D0 000000000011F588) returning a dummy value (current locale)
0108:fixme:nls:get_dummy_preferred_ui_language (0x8 000000000011F580 000000000011F4D0 000000000011F588) returning a dummy value (current locale)
0108:fixme:nls:get_dummy_preferred_ui_language (0x8 000000000011F580 000000000011F4D0 000000000011F588) returning a dummy value (current locale)
0108:fixme:nls:get_dummy_preferred_ui_language (0x8 000000000011F580 000000000011F4D0 000000000011F588) returning a dummy value (current locale)
0108:fixme:nls:get_dummy_preferred_ui_language (0x8 000000000011F580 000000000011F4D0 000000000011F588) returning a dummy value (current locale)
0108:fixme:nls:get_dummy_preferred_ui_language (0x8 000000000011F580 000000000011F4D0 000000000011F588) returning a dummy value (current locale)
0108:fixme:d3d:wined3d_guess_card No card selector available for card vendor 0000 (using GL_RENDERER "llvmpipe (LLVM 13.0.0, 256 bits)").
wine: Unhandled page fault on execute access to 0000000000000000 at address 0000000000000000 (thread 0108), starting debugger...
0110:fixme:imm:ImeSetActiveContext (0x2548f0, 1): stub
0110:fixme:imm:ImmReleaseContext (0000000000010084, 00000000002548F0): stub
0098:fixme:imm:ImeSetActiveContext (0x258320, 0): stub
0098:fixme:imm:ImmReleaseContext (0000000000010020, 0000000000258320): stub
Unhandled exception: page fault on execute access to 0x0000000000000000 in 64-bit code (0x0000000000000000).
Register dump:
rip:0000000000000000 rsp:000000000011e378 rbp:0000000000009598 eflags:00010246 ( R- -- I Z- -P- )
rax:000000007fbf6bf0 rbx:000000000011e428 rcx:00007fa25347e7cc rdx:000000000000005c
rsi:000000000011e430 rdi:000000007f44f5a0 r8:000000007fc05840 r9:0000000000000000 r10:000000000011e430
r11:000000007fbf3020 r12:00007fa2538f1b00 r13:0000000000000000 r14:000000007fc05840 r15:00007fa253482a7d
Stack dump:
0x000000000011e378: 00007fa25243e4f8 0000000000000000
0x000000000011e388: 000000000011e430 0000000000000000
0x000000000011e398: 0000000000000003 0000000000000004
0x000000000011e3a8: 0000000000000000 0000000200008367
0x000000000011e3b8: 0000000085892d00 000000007fc05840
0x000000000011e3c8: 0000000000000001 000000000011e580
0x000000000011e3d8: 1de17ae085892d00 0000000000000000
0x000000000011e3e8: 0000000000188f20 000000000018f8a0
0x000000000011e3f8: 000000000011e430 0000000000000003
0x000000000011e408: 0000000000188f28 00007fa254334de0
0x000000000011e418: 00007fa25244125d 00007fa254334de0
0x000000000011e428: 0000000000000000 0000000000000000
Backtrace:
=>0 0x0000000000000000 (0x0000000000009598)
0x0000000000000000: -- no code accessible --
Modules:
Module Address Debug info Name (121 modules)
PE 0000000000010000-000000000001f000 Deferred vtkviewscontext2d-8.2
PE 0000000000250000-000000000029d000 Deferred avogadrorendering
PE 00000000002a0000-0000000000323000 Deferred glew32
PE 0000000000330000-00000000003c2000 Deferred avogadroqtgui
PE 00000000003d0000-000000000044f000 Deferred avogadroio
PE 0000000000450000-00000000005a8000 Deferred avogadrocore
PE 00000000005b0000-0000000000b05000 Deferred qt5widgets
PE 0000000000b10000-000000000114b000 Deferred qt5gui
PE 0000000001150000-000000000170c000 Deferred qt5core
PE 0000000001710000-0000000001913000 Deferred avogadroqtplugins
PE 0000000001920000-0000000001977000 Deferred qt5svg
PE 0000000001980000-0000000001995000 Deferred avogadrovtk
PE 00000000019a0000-00000000019e6000 Deferred vtkguisupportqt-8.2
PE 00000000019f0000-0000000001b5f000 Deferred vtkrenderingopengl2-8.2
PE 0000000001b60000-0000000001cc7000 Deferred vtkrenderingcore-8.2
PE 0000000001cd0000-0000000001cec000 Deferred vtkcommoncolor-8.2
PE 0000000001cf0000-0000000001f8d000 Deferred vtkcommoncore-8.2
PE 0000000001f90000-0000000001fdc000 Deferred vtksys-8.2
PE 0000000001fe0000-000000000203b000 Deferred vtkfiltersgeometry-8.2
PE 0000000002040000-000000000230b000 Deferred vtkfilterscore-8.2
PE 0000000002310000-0000000002398000 Deferred vtkcommonexecutionmodel-8.2
PE 00000000023a0000-0000000002654000 Deferred vtkcommondatamodel-8.2
PE 0000000002660000-000000000268d000 Deferred vtkcommontransforms-8.2
PE 0000000002690000-00000000026b1000 Deferred vtkcommonmath-8.2
PE 00000000026c0000-00000000026dd000 Deferred vtkcommonmisc-8.2
PE 00000000026e0000-00000000026fc000 Deferred vtkcommonsystem-8.2
PE 0000000002700000-0000000002771000 Deferred vtkfilterssources-8.2
PE 0000000002780000-000000000299d000 Deferred vtkfiltersgeneral-8.2
PE 00000000029a0000-00000000029c8000 Deferred vtkcommoncomputationalgeometry-8.2
PE 00000000029d0000-0000000002a4b000 Deferred vtkglew-8.2
PE 0000000002a50000-0000000002a84000 Deferred vtkinteractionstyle-8.2
PE 0000000002a90000-0000000002b34000 Deferred vtkfiltersextraction-8.2
PE 0000000002b40000-0000000002bd2000 Deferred vtkfiltersstatistics-8.2
PE 0000000002be0000-0000000002bfd000 Deferred vtkimagingfourier-8.2
PE 0000000002c00000-0000000002d3b000 Deferred vtkimagingcore-8.2
PE 0000000002d40000-0000000002dbb000 Deferred vtkrenderingvolumeopengl2-8.2
PE 0000000002dc0000-0000000002df1000 Deferred vtkimagingmath-8.2
PE 0000000002e00000-00000000031ac000 Deferred vtkrenderingvolume-8.2
PE 00000000031b0000-0000000003283000 Deferred vtkchartscore-8.2
PE 0000000003290000-00000000032c4000 Deferred vtkrenderingcontext2d-8.2
PE 00000000032d0000-0000000003373000 Deferred vtkrenderingfreetype-8.2
PE 0000000003380000-00000000033f4000 Deferred vtkfreetype-8.2
PE 0000000003400000-000000000341a000 Deferred zlib1
PE 0000000003420000-00000000034b7000 Deferred vtkinfoviscore-8.2
PE 00000000034c0000-00000000034dd000 Deferred vtkviewscore-8.2
PE 00000000034e0000-000000000350e000 Deferred vtkrenderingcontextopengl2-8.2
PE 0000000003510000-000000000355e000 Deferred vtkdomainschemistry-8.2
PE 0000000003560000-000000000357b000 Deferred vtkioxmlparser-8.2
PE 0000000003580000-00000000035d4000 Deferred vtkiocore-8.2
PE 00000000035e0000-00000000035f7000 Deferred vtklz4-8.2
PE 0000000003600000-000000000362a000 Deferred vtklzma-8.2
PE 0000000003630000-0000000003641000 Deferred vtkdoubleconversion-8.2
PE 0000000003650000-0000000003677000 Deferred vtkexpat-8.2
PE 0000000003680000-00000000036cb000 Deferred avogadromolequeue
PE 00000000036d0000-000000000381a000 Deferred qt5network
PE 0000000003820000-0000000003863000 Deferred avogadroquantumio
PE 0000000003870000-0000000003917000 Deferred archive
PE 0000000003920000-0000000003940000 Deferred msym
PE 0000000003940000-000000000394b000 Deferred qt5concurrent
PE 0000000003950000-0000000003968000 Deferred molequeueservercore
PE 0000000003970000-0000000003985000 Deferred molequeueclient
PE 0000000004340000-00000000044ae000 Deferred qwindows
PE 00000000044e0000-0000000004506000 Deferred qwindowsvistastyle
PE 000000007a850000-000000007a854000 Deferred opengl32
PE 000000007b000000-000000007b0d5000 Deferred kernelbase
PE 000000007b600000-000000007b812000 Deferred kernel32
PE 0000000140000000-00000001400ee000 Deferred avogadro2
PE 0000000170000000-000000017009a000 Deferred ntdll
PE 0000000180000000-0000000180012000 Deferred avogadroqtopengl
PE 00000001c69e0000-00000001c72fc000 Deferred shell32
PE 00000001c8b40000-00000001c8b60000 Deferred msacm32
PE 00000001c8db0000-00000001c8e46000 Deferred msvcrt
PE 00000001cd860000-00000001cd863000 Deferred api-ms-win-crt-utility-l1-1-0
PE 00000001dd3f0000-00000001dd4bd000 Deferred crypt32
PE 00000001ec2b0000-00000001ec2d5000 Deferred ws2_32
PE 000000021a7e0000-000000021a855000 Deferred setupapi
PE 0000000231ae0000-0000000231b62000 Deferred rpcrt4
PE 000000023d820000-000000023da6a000 Deferred user32
PE 0000000240030000-000000024005e000 Deferred iphlpapi
PE 0000000241850000-0000000241853000 Deferred api-ms-win-crt-environment-l1-1-0
PE 000000024f470000-000000024f48f000 Deferred mpr
PE 000000025d740000-000000025d74e000 Deferred dwmapi
PE 0000000262250000-0000000262254000 Deferred api-ms-win-crt-runtime-l1-1-0
PE 000000026b4c0000-000000026b53b000 Deferred gdi32
PE 000000026ed50000-000000026ed6b000 Deferred vcruntime140
PE 00000002739c0000-0000000273af6000 Deferred oleaut32
PE 000000028ba60000-000000028ba63000 Deferred api-ms-win-crt-time-l1-1-0
PE 000000028dfa0000-000000028dfac000 Deferred nsi
PE 00000002967b0000-00000002967e5000 Deferred d3d9
PE 000000029cfc0000-000000029cfd6000 Deferred dnsapi
PE 00000002a4090000-00000002a409e000 Deferred wtsapi32
PE 00000002b8510000-00000002b8522000 Deferred wintab32
PE 00000002d4d40000-00000002d4d56000 Deferred bcrypt
PE 00000002e3540000-00000002e3591000 Deferred shlwapi
PE 00000002e8f10000-00000002e902b000 Deferred ole32
PE 00000002f1fa0000-00000002f1fad000 Deferred version
PE 00000002f7230000-00000002f725e000 Deferred uxtheme
PE 00000002f7f20000-00000002f7f2c000 Deferred vcruntime140_1
PE 00000002fe110000-00000002fe115000 Deferred api-ms-win-crt-multibyte-l1-1-0
PE 000000030a2c0000-000000030a2c4000 Deferred api-ms-win-crt-stdio-l1-1-0
PE 00000003126f0000-0000000312709000 Deferred shcore
PE 0000000316370000-000000031637b000 Deferred psapi
PE 0000000327020000-0000000327072000 Deferred combase
PE 000000032a700000-000000032a729000 Deferred sechost
PE 0000000330260000-000000033029f000 Deferred advapi32
PE 000000033ea00000-000000033ea04000 Deferred api-ms-win-crt-string-l1-1-0
PE 0000000344840000-0000000344843000 Deferred api-ms-win-crt-filesystem-l1-1-0
PE 0000000350a30000-0000000350a34000 Deferred api-ms-win-crt-convert-l1-1-0
PE 0000000355100000-0000000355103000 Deferred api-ms-win-crt-locale-l1-1-0
PE 0000000360a80000-0000000360a85000 Deferred api-ms-win-crt-math-l1-1-0
PE 0000000360e10000-0000000360e9d000 Deferred msvcp140
PE 00000003673d0000-00000003673f8000 Deferred netapi32
PE 0000000375610000-0000000375648000 Deferred win32u
PE 00000003871c0000-000000038720e000 Deferred concrt140
PE 0000000388e20000-0000000388e2e000 Deferred userenv
PE 000000039b510000-000000039b513000 Deferred api-ms-win-crt-heap-l1-1-0
PE 00000003af670000-00000003af76c000 Deferred ucrtbase
PE 00000003afd00000-00000003afd1a000 Deferred imm32
PE 00000003b8f00000-00000003b8fc1000 Deferred winmm
PE 00007fa254190000-00007fa254194000 Deferred wined3d
PE 00007fa2547a0000-00007fa2547a4000 Deferred winex11
Threads:
process tid prio (all id:s are in hex)
00000020 start.exe
00000024 0
00000038 services.exe
0000003c 0
00000040 0
0000004c 0
00000064 0
00000080 0
0000008c 0
000000b0 0
000000c4 0
000000dc 0
000000e0 0
00000044 svchost.exe
00000048 0
00000054 0
00000058 0
0000005c winedevice.exe
00000060 0
00000068 0
0000006c 0
00000070 0
00000074 0
000000c0 0
00000078 winedevice.exe
0000007c 0
00000084 0
00000088 0
00000090 0
0000009c 0
000000a0 0
000000a4 0
00000094 explorer.exe
00000098 0
000000c8 0
000000cc 0
000000a8 plugplay.exe
000000ac 0
000000b4 0
000000b8 0
000000bc 0
000000d4 rpcss.exe
000000d8 0
000000e4 0
000000e8 0
000000ec 0
000000f0 0
000000f4 0
000000fc conhost.exe
00000100 0
00000104 (D) Z:\home\theeast\.wine\drive_c\Program Files\Avogadro2\bin\avogadro2.exe
00000108 0 <==
00000114 0
System information:
Wine build: wine-7.0-rc5
Platform: x86_64
Version: Windows 7
Host system: Linux
Host version: 5.15.12-artix1-1
Re: Avogadro 2 don't show chemicals
I looked into
Seems to be a driver problem. glxgears works fine, glxinfo | grep 'OpenGL renderer' returned OpenGL renderer string: Mesa DRI Intel(R) HD Graphics 4000 (IVB GT2) and I tried winetricks d3dx9_24 wmp11 but it still show the same error.
I'm quite busy so I won't be able to do much research so I really appreciate the help.
Code: Select all
0108:fixme:d3d:wined3d_guess_card No card selector available for card vendor 0000 (using GL_RENDERER "llvmpipe (LLVM 13.0.0, 256 bits)").
I'm quite busy so I won't be able to do much research so I really appreciate the help.
Re: Avogadro 2 don't show chemicals
The LIBGL_ALWAYS_SOFTWARE=1 triggers the use of the software renderer (llvm).
Could you also post the terminal output without LIBGL_ALWAYS_SOFTWARE=1?
Could you also post the terminal output without LIBGL_ALWAYS_SOFTWARE=1?
Re: Avogadro 2 don't show chemicals
This is without LIBGL_ALWAYS_SOFTWARE=1
Code: Select all
MESA-INTEL: warning: Ivy Bridge Vulkan support is incomplete
Locale: "en_US"
0104:fixme:nls:get_dummy_preferred_ui_language (0x8 000000000011F580 000000000011F4D0 000000000011F588) returning a dummy value (current locale)
0104:fixme:nls:get_dummy_preferred_ui_language (0x8 000000000011F580 000000000011F4D0 000000000011F588) returning a dummy value (current locale)
0104:fixme:nls:get_dummy_preferred_ui_language (0x8 000000000011F580 000000000011F4D0 000000000011F588) returning a dummy value (current locale)
0104:fixme:nls:get_dummy_preferred_ui_language (0x8 000000000011F580 000000000011F4D0 000000000011F588) returning a dummy value (current locale)
0104:fixme:nls:get_dummy_preferred_ui_language (0x8 000000000011F580 000000000011F4D0 000000000011F588) returning a dummy value (current locale)
0104:fixme:nls:get_dummy_preferred_ui_language (0x8 000000000011F580 000000000011F4D0 000000000011F588) returning a dummy value (current locale)
0104:fixme:nls:get_dummy_preferred_ui_language (0x8 000000000011F580 000000000011F4D0 000000000011F588) returning a dummy value (current locale)
0104:fixme:nls:get_dummy_preferred_ui_language (0x8 000000000011F580 000000000011F4D0 000000000011F588) returning a dummy value (current locale)
0104:fixme:ntdll:NtQuerySystemInformation info_class SYSTEM_PERFORMANCE_INFORMATION
qt.qpa.gl: Unable to disable rotation.
0104:fixme:wgl:X11DRV_wglGetPixelFormatAttribivARB unsupported 2008 WGL Attribute
Extension plugins dynamically found
41
Checking for "commands" scripts in "C:/users/theeast/AppData/Local/OpenChemistry/Avogadro/commands"
Checking for "commands" scripts in "C:/ProgramData/OpenChemistry/Avogadro/commands"
Checking for "commands" scripts in "Z:/home/theeast/.wine/drive_c/Program Files/Avogadro2/bin/commands"
Checking for "commands" scripts in "Z:/home/theeast/.wine/drive_c/Program Files/Avogadro2/bin/data/commands"
Checking for "commands" scripts in "Z:/home/theeast/.wine/drive_c/Program Files/Avogadro2/bin/data/OpenChemistry/Avogadro/commands"
Checking for "commands" scripts in "Z:/home/theeast/.wine/drive_c/Program Files/Avogadro2/bin/../lib/avogadro2/scripts/commands"
Python interpreter "C:/hostedtoolcache/windows/Python/3.10.0/x64/python3.exe" does not exist trying "python" in your path. Please set a path to the pyt
hon interpreter.
Can't find python in your path
ScriptLoader::queryProgramName: Unable to retrieve program name for "Z:/home/theeast/.wine/drive_c/Program Files/Avogadro2/lib/avogadro2/scripts/comman
ds/scale.py" ; "Error running script 'python.exe Z:/home/theeast/.wine/drive_c/Program Files/Avogadro2/lib/avogadro2/scripts/commands/scale.py --displa
y-name --lang en_US': Timed out waiting for finish (Script failed to start.)."
OBProcess::executeObabel: Running "Z:/home/theeast/.wine/drive_c/Program Files/Avogadro2/bin/obabel.exe" "-L formats read"
OBProcess::executeObabel: Running "Z:/home/theeast/.wine/drive_c/Program Files/Avogadro2/bin/obabel.exe" "-L formats write"
OBProcess::executeObabel: Running "Z:/home/theeast/.wine/drive_c/Program Files/Avogadro2/bin/obabel.exe" "-L forcefields"
OBProcess::executeObabel: Running "Z:/home/theeast/.wine/drive_c/Program Files/Avogadro2/bin/obabel.exe" "-L charges"
OBProcess::executeObabel: Running "Z:/home/theeast/.wine/drive_c/Program Files/Avogadro2/bin/obabel.exe" "-V"
0138:fixme:msvcp:_Locinfo__Locinfo_ctor_cat_cstr (000000000011F840 1 C) semi-stub
"Z:/home/theeast/.wine/drive_c/Program Files/Avogadro2/bin/obabel.exe" found: "Z:/home/theeast/.wine/drive_c/Program Files/Avogadro2/bin/obabel.exe:
Open Babel 3.1.0 -- Dec 11 2021 -- 20:32:19"
0104:fixme:font:find_matching_face Untranslated charset 255
0104:fixme:font:get_nearest_charset returning DEFAULT_CHARSET face->fs.fsCsb[0] = 00000000 file = L"\\??\\Z:\\usr\\share\\fonts\\noto\\NotoKufiArabic-Regular.ttf"
0104:fixme:font:find_matching_face Untranslated charset 255
0104:fixme:font:get_nearest_charset returning DEFAULT_CHARSET face->fs.fsCsb[0] = 00000000 file = L"\\??\\Z:\\usr\\share\\fonts\\noto\\NotoKufiArabic-Bold.ttf"
0104:fixme:font:find_matching_face Untranslated charset 255
0104:fixme:font:get_nearest_charset returning DEFAULT_CHARSET face->fs.fsCsb[0] = 00000000 file = L"\\??\\Z:\\usr\\share\\fonts\\noto\\NotoKufiArabic-Black.ttf"
0104:fixme:font:find_matching_face Untranslated charset 255
0104:fixme:font:get_nearest_charset returning DEFAULT_CHARSET face->fs.fsCsb[0] = 00000000 file = L"\\??\\Z:\\usr\\share\\fonts\\noto\\NotoKufiArabic-Light.ttf"
0104:fixme:font:find_matching_face Untranslated charset 255
0104:fixme:font:get_nearest_charset returning DEFAULT_CHARSET face->fs.fsCsb[0] = 00000000 file = L"\\??\\Z:\\usr\\share\\fonts\\noto\\NotoKufiArabic-Medium.ttf"
0104:fixme:font:find_matching_face Untranslated charset 255
0104:fixme:font:get_nearest_charset returning DEFAULT_CHARSET face->fs.fsCsb[0] = 00000000 file = L"\\??\\Z:\\usr\\share\\fonts\\noto\\NotoKufiArabic-Thin.ttf"
0130:fixme:msvcp:_Locinfo__Locinfo_ctor_cat_cstr (000000000011F510 1 C) semi-stub
0110:fixme:msvcp:_Locinfo__Locinfo_ctor_cat_cstr (000000000011F510 1 C) semi-stub
0120:fixme:msvcp:_Locinfo__Locinfo_ctor_cat_cstr (000000000011F510 1 C) semi-stub
0128:fixme:msvcp:_Locinfo__Locinfo_ctor_cat_cstr (000000000011F510 1 C) semi-stub
0120:fixme:msvcp:_Locinfo__Locinfo_ctor_cat_cstr (000000000011F5B0 1 C) semi-stub
0120:fixme:msvcp:_Locinfo__Locinfo_ctor_cat_cstr (000000000011F2E0 1 C) semi-stub
Checking for "inputGenerators" scripts in "C:/users/theeast/AppData/Local/OpenChemistry/Avogadro/inputGenerators"
Checking for "inputGenerators" scripts in "C:/ProgramData/OpenChemistry/Avogadro/inputGenerators"
Checking for "inputGenerators" scripts in "Z:/home/theeast/.wine/drive_c/Program Files/Avogadro2/bin/inputGenerators"
Checking for "inputGenerators" scripts in "Z:/home/theeast/.wine/drive_c/Program Files/Avogadro2/bin/data/inputGenerators"
Checking for "inputGenerators" scripts in "Z:/home/theeast/.wine/drive_c/Program Files/Avogadro2/bin/data/OpenChemistry/Avogadro/inputGenerators"
Checking for "inputGenerators" scripts in "Z:/home/theeast/.wine/drive_c/Program Files/Avogadro2/bin/../lib/avogadro2/scripts/inputGenerators"
Python interpreter "C:/hostedtoolcache/windows/Python/3.10.0/x64/python3.exe" does not exist trying "python" in your path. Please set a path to the pyt
hon interpreter.
Can't find python in your path
ScriptLoader::queryProgramName: Unable to retrieve program name for "Z:/home/theeast/.wine/drive_c/Program Files/Avogadro2/lib/avogadro2/scripts/inputG
enerators/dalton.py" ; "Error running script 'python.exe Z:/home/theeast/.wine/drive_c/Program Files/Avogadro2/lib/avogadro2/scripts/inputGenerators/da
lton.py --display-name --lang en_US': Timed out waiting for finish (Script failed to start.)."
Python interpreter "C:/hostedtoolcache/windows/Python/3.10.0/x64/python3.exe" does not exist trying "python" in your path. Please set a path to the pyt
hon interpreter.
Can't find python in your path
ScriptLoader::queryProgramName: Unable to retrieve program name for "Z:/home/theeast/.wine/drive_c/Program Files/Avogadro2/lib/avogadro2/scripts/inputG
enerators/gamessuk.py" ; "Error running script 'python.exe Z:/home/theeast/.wine/drive_c/Program Files/Avogadro2/lib/avogadro2/scripts/inputGenerators/
gamessuk.py --display-name --lang en_US': Timed out waiting for finish (Script failed to start.)."
Python interpreter "C:/hostedtoolcache/windows/Python/3.10.0/x64/python3.exe" does not exist trying "python" in your path. Please set a path to the pyt
hon interpreter.
Can't find python in your path
ScriptLoader::queryProgramName: Unable to retrieve program name for "Z:/home/theeast/.wine/drive_c/Program Files/Avogadro2/lib/avogadro2/scripts/inputG
enerators/gaussian.py" ; "Error running script 'python.exe Z:/home/theeast/.wine/drive_c/Program Files/Avogadro2/lib/avogadro2/scripts/inputGenerators/
gaussian.py --display-name --lang en_US': Timed out waiting for finish (Script failed to start.)."
Python interpreter "C:/hostedtoolcache/windows/Python/3.10.0/x64/python3.exe" does not exist trying "python" in your path. Please set a path to the pyt
hon interpreter.
Can't find python in your path
ScriptLoader::queryProgramName: Unable to retrieve program name for "Z:/home/theeast/.wine/drive_c/Program Files/Avogadro2/lib/avogadro2/scripts/inputG
enerators/molpro.py" ; "Error running script 'python.exe Z:/home/theeast/.wine/drive_c/Program Files/Avogadro2/lib/avogadro2/scripts/inputGenerators/mo
lpro.py --display-name --lang en_US': Timed out waiting for finish (Script failed to start.)."
Python interpreter "C:/hostedtoolcache/windows/Python/3.10.0/x64/python3.exe" does not exist trying "python" in your path. Please set a path to the pyt
hon interpreter.
Can't find python in your path
ScriptLoader::queryProgramName: Unable to retrieve program name for "Z:/home/theeast/.wine/drive_c/Program Files/Avogadro2/lib/avogadro2/scripts/inputG
enerators/mopac.py" ; "Error running script 'python.exe Z:/home/theeast/.wine/drive_c/Program Files/Avogadro2/lib/avogadro2/scripts/inputGenerators/mop
ac.py --display-name --lang en_US': Timed out waiting for finish (Script failed to start.)."
Python interpreter "C:/hostedtoolcache/windows/Python/3.10.0/x64/python3.exe" does not exist trying "python" in your path. Please set a path to the pyt
hon interpreter.
Can't find python in your path
ScriptLoader::queryProgramName: Unable to retrieve program name for "Z:/home/theeast/.wine/drive_c/Program Files/Avogadro2/lib/avogadro2/scripts/inputG
enerators/nwchem.py" ; "Error running script 'python.exe Z:/home/theeast/.wine/drive_c/Program Files/Avogadro2/lib/avogadro2/scripts/inputGenerators/nw
chem.py --display-name --lang en_US': Timed out waiting for finish (Script failed to start.)."
Python interpreter "C:/hostedtoolcache/windows/Python/3.10.0/x64/python3.exe" does not exist trying "python" in your path. Please set a path to the pyt
hon interpreter.
Can't find python in your path
ScriptLoader::queryProgramName: Unable to retrieve program name for "Z:/home/theeast/.wine/drive_c/Program Files/Avogadro2/lib/avogadro2/scripts/inputG
enerators/orca.py" ; "Error running script 'python.exe Z:/home/theeast/.wine/drive_c/Program Files/Avogadro2/lib/avogadro2/scripts/inputGenerators/orca
.py --display-name --lang en_US': Timed out waiting for finish (Script failed to start.)."
Python interpreter "C:/hostedtoolcache/windows/Python/3.10.0/x64/python3.exe" does not exist trying "python" in your path. Please set a path to the pyt
hon interpreter.
Can't find python in your path
ScriptLoader::queryProgramName: Unable to retrieve program name for "Z:/home/theeast/.wine/drive_c/Program Files/Avogadro2/lib/avogadro2/scripts/inputG
enerators/psi4.py" ; "Error running script 'python.exe Z:/home/theeast/.wine/drive_c/Program Files/Avogadro2/lib/avogadro2/scripts/inputGenerators/psi4
.py --display-name --lang en_US': Timed out waiting for finish (Script failed to start.)."
Python interpreter "C:/hostedtoolcache/windows/Python/3.10.0/x64/python3.exe" does not exist trying "python" in your path. Please set a path to the pyt
hon interpreter.
Can't find python in your path
ScriptLoader::queryProgramName: Unable to retrieve program name for "Z:/home/theeast/.wine/drive_c/Program Files/Avogadro2/lib/avogadro2/scripts/inputG
enerators/pyscf.py" ; "Error running script 'python.exe Z:/home/theeast/.wine/drive_c/Program Files/Avogadro2/lib/avogadro2/scripts/inputGenerators/pys
cf.py --display-name --lang en_US': Timed out waiting for finish (Script failed to start.)."
Python interpreter "C:/hostedtoolcache/windows/Python/3.10.0/x64/python3.exe" does not exist trying "python" in your path. Please set a path to the pyt
hon interpreter.
Can't find python in your path
ScriptLoader::queryProgramName: Unable to retrieve program name for "Z:/home/theeast/.wine/drive_c/Program Files/Avogadro2/lib/avogadro2/scripts/inputG
enerators/qchem.py" ; "Error running script 'python.exe Z:/home/theeast/.wine/drive_c/Program Files/Avogadro2/lib/avogadro2/scripts/inputGenerators/qch
em.py --display-name --lang en_US': Timed out waiting for finish (Script failed to start.)."
Python interpreter "C:/hostedtoolcache/windows/Python/3.10.0/x64/python3.exe" does not exist trying "python" in your path. Please set a path to the pyt
hon interpreter.
Can't find python in your path
ScriptLoader::queryProgramName: Unable to retrieve program name for "Z:/home/theeast/.wine/drive_c/Program Files/Avogadro2/lib/avogadro2/scripts/inputG
enerators/terachem.py" ; "Error running script 'python.exe Z:/home/theeast/.wine/drive_c/Program Files/Avogadro2/lib/avogadro2/scripts/inputGenerators/
terachem.py --display-name --lang en_US': Timed out waiting for finish (Script failed to start.)."
Checking for "formatScripts" scripts in "C:/users/theeast/AppData/Local/OpenChemistry/Avogadro/formatScripts"
Checking for "formatScripts" scripts in "C:/ProgramData/OpenChemistry/Avogadro/formatScripts"
Checking for "formatScripts" scripts in "Z:/home/theeast/.wine/drive_c/Program Files/Avogadro2/bin/formatScripts"
Checking for "formatScripts" scripts in "Z:/home/theeast/.wine/drive_c/Program Files/Avogadro2/bin/data/formatScripts"
Checking for "formatScripts" scripts in "Z:/home/theeast/.wine/drive_c/Program Files/Avogadro2/bin/data/OpenChemistry/Avogadro/formatScripts"
Checking for "formatScripts" scripts in "Z:/home/theeast/.wine/drive_c/Program Files/Avogadro2/bin/../lib/avogadro2/scripts/formatScripts"
Python interpreter "C:/hostedtoolcache/windows/Python/3.10.0/x64/python3.exe" does not exist trying "python" in your path. Please set a path to the pyt
hon interpreter.
Can't find python in your path
ScriptLoader::queryProgramName: Unable to retrieve program name for "Z:/home/theeast/.wine/drive_c/Program Files/Avogadro2/lib/avogadro2/scripts/format
Scripts/zyx.py" ; "Error running script 'python.exe Z:/home/theeast/.wine/drive_c/Program Files/Avogadro2/lib/avogadro2/scripts/formatScripts/zyx.py --
display-name --lang en_US': Timed out waiting for finish (Script failed to start.)."
0104:fixme:wgl:X11DRV_wglGetPixelFormatAttribivARB unsupported 2008 WGL Attribute
0104:fixme:wgl:X11DRV_wglGetPixelFormatAttribivARB unsupported 2008 WGL Attribute
0104:fixme:dwmapi:DwmEnableBlurBehindWindow 0000000000030074 000000000011E670
0094:fixme:imm:ImeSetActiveContext (0x2583c0, 0): stub
0094:fixme:imm:ImmReleaseContext (0000000000010020, 00000000002583C0): stub
0104:fixme:imm:ImeSetActiveContext (0x193b50, 1): stub
0104:fixme:imm:ImmReleaseContext (000000000002006C, 0000000000193B50): stub
0104:fixme:wgl:X11DRV_wglGetPixelFormatAttribivARB unsupported 2008 WGL Attribute
0104:fixme:dwmapi:DwmEnableBlurBehindWindow 000000000002006C 000000000011AD50
Open Babel formats ready: 142
0104:fixme:dwmapi:DwmEnableBlurBehindWindow 000000000003004E 000000000011F310
Re: Avogadro 2 don't show chemicals
Alright, I'm back. After messing with some config, I found out that the bug will be fixed if Avogadro2 is installed in a fresh WINEPREFIX although Create Surfaces seems to be missing some functions. obabel.exe will have to be installed separately then symlink to Avogadro2's folder.
Re: Avogadro 2 don't show chemicals
Nevermind, that is just an uncompleted feature.although Create Surfaces seems to be missing some functions.
Re: Avogadro 2 don't show chemicals
The Windows installation file above is of version 1.91.0, which is outdated. If you want to use v1.95.1, I recommend installing nightly version here https://nightly.link/OpenChemistry/avog ... 64.exe.zip as the official one display weird behaviors even on my Windows 7 dual-boot. If you have problem with OpenBable, symlink obable.exe from a separate OpenBable install.