:~$ wineboot -u
INTEL-MESA: warning: Haswell Vulkan support is incomplete
00e0:fixme:advapi:RegisterEventSourceW ((null),L"AdobeARMservice"): stub
00e0:fixme:advapi:ReportEventW (CAFE4242,0x0004,0x0000,0x00000000,00000000,0x0001,0x00000000,0233FC6C,00000000): stub
00e0:fixme:advapi:DeregisterEventSource (CAFE4242) stub
002c:fixme:ver:GetCurrentPackageId (0031FEA4 00000000): stub
0034:fixme:ver:GetCurrentPackageId (0031FEA4 00000000): stub
0124:fixme:ver:GetCurrentPackageId (0031FEA4 00000000): stub
0130:err:setupapi:create_dest_file failed to create L"C:\\windows\\system32\\shlwapi.dll" (error=80)
0130:err:setupapi:create_dest_file failed to create L"C:\\windows\\system32\\ucrtbase.dll" (error=80)
0130:fixme:file:NtLockFile I/O completion on lock not implemented yet
0130:fixme:ntdll:NtQuerySystemInformation info_class SYSTEM_PERFORMANCE_INFORMATION
0138:err:module:import_dll Library comctl32.dll (which is needed by L"C:\\windows\\system32\\control.exe") not found
0138:err:module:LdrInitializeThunk Importing dlls for L"C:\\windows\\system32\\control.exe" failed, status c0000135
0130:fixme:heap:RtlSetHeapInformation 00420000 0 0031CC14 4 stub
0130:fixme:ntdll:EtwRegisterTraceGuidsW register trace class {0cfe0455-93ba-440d-a3fe-553973d0b723}
0130:fixme:ntdll:EtwRegisterTraceGuidsW register trace class {797fabac-7b58-4796-b924-d51178a59ce4}
Native IE detected, not doing registration
0140:fixme:ver:GetCurrentPackageId (0031FEA4 00000000): stub
0130:fixme:ver:GetCurrentPackageId (0031FEA4 00000000): stub
wine: configuration in L"H:\\.wine" has been updated.
011c:fixme:ver:GetCurrentPackageId (0031FEA4 00000000): stub
chaoz@chaoz:~$ 0158:err:module:import_dll Library comctl32.dll (which is needed by L"C:\\windows\\system32\\msi.dll") not found
0158:err:module:import_dll Library msi.dll (which is needed by L"c:\\Programme\\Gemeinsame Dateien\\Adobe\\ARM\\1.0\\AdobeARM.exe") not found
0158:err:module:import_dll Library comctl32.dll (which is needed by L"C:\\windows\\system32\\COMDLG32.dll") not found
0158:err:module:import_dll Library COMDLG32.dll (which is needed by L"c:\\Programme\\Gemeinsame Dateien\\Adobe\\ARM\\1.0\\AdobeARM.exe") not found
0158:err:module:import_dll Library COMCTL32.dll (which is needed by L"c:\\Programme\\Gemeinsame Dateien\\Adobe\\ARM\\1.0\\AdobeARM.exe") not found
0158:err:module:LdrInitializeThunk Importing dlls for L"c:\\Programme\\Gemeinsame Dateien\\Adobe\\ARM\\1.0\\AdobeARM.exe" failed, status c0000135
0150:fixme:heap:RtlSetHeapInformation 00000000 1 00000000 0 stub
:~$ winecfg
0170:err:module:import_dll Library comctl32.dll (which is needed by L"c:\\windows\\system32\\winecfg.exe") not found
0170:err:module:import_dll Library comctl32.dll (which is needed by L"c:\\windows\\system32\\comdlg32.dll") not found
0170:err:module:import_dll Library comdlg32.dll (which is needed by L"c:\\windows\\system32\\winecfg.exe") not found
0170:err:module:LdrInitializeThunk Importing dlls for L"c:\\windows\\system32\\winecfg.exe" failed, status c0000135
0168:fixme:ver:GetCurrentPackageId (0031FEA4 00000000): stub
chaoz@chaoz:~$ 0178:err:module:import_dll Library COMCTL32.dll (which is needed by L"c:\\Programme\\Java\\jre7\\bin\\java.exe") not found
0178:err:module:LdrInitializeThunk Importing dlls for L"c:\\Programme\\Java\\jre7\\bin\\java.exe" failed, status c0000135
wine: configuration in L"/home/floris/.wine" has been updated.
You can try to copy the comctl32.dll and comdlg32.dll files from the working prefix to you old prefix.
Make sure you copy both the version from system32 and the one from syswow64.
And rerun wineboot -u